Cut the squash in half with a sharp knife and remove the seeds. Place them on a baking dish.
Preheat the oven to 375 degrees F. Combine diced apples with sugar, butter, nutmeg, and cinnamon. Spoon into squash halves.
Cover with foil and bake for 50-60 minutes or until squash is tender. Garnish with pecan and honey and serve.